Representing Different Biological Sets


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Documentation for package ‘BiocSet’ version 1.18.0

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arrange_element Functions applied to elements in a 'BiocSet' object
arrange_elementset Functions applied to elementsets in a 'BiocSet' object
arrange_set Functions applied to sets in a 'BiocSet' object
BiocSet BiocSet class
BiocSet-class BiocSet class
BiocSet_from_elementset BiocSet class
BiocSet_from_GeneSetCollection GeneSetCollection
coerce as("BiocSet", "list")
coerce-method as("BiocSet", "list")
data.frame_from_element Functions applied to elements in a 'BiocSet' object
data.frame_from_elementset Functions applied to elementsets in a 'BiocSet' object
data.frame_from_set Functions applied to sets in a 'BiocSet' object
elementset_funs Functions applied to elementsets in a 'BiocSet' object
element_funs Functions applied to elements in a 'BiocSet' object
es_element BiocSet class
es_element-method BiocSet class
es_elementset BiocSet class
es_elementset-method BiocSet class
es_set BiocSet class
es_set-method BiocSet class
export-method Importing/exporting
filter_element Functions applied to elements in a 'BiocSet' object
filter_elementset Functions applied to elementsets in a 'BiocSet' object
filter_set Functions applied to sets in a 'BiocSet' object
genesetcollection GeneSetCollection
GeneSetCollection_from_BiocSet GeneSetCollection
go_sets Functions for mapping sets in the set tibble to different id types
import Importing/exporting
import-method Importing/exporting
intersect_single Intersect on a single 'BiocSet' object
kegg_sets Functions for mapping sets in the set tibble to different id types
left_join_element Functions applied to elements in a 'BiocSet' object
left_join_elementset Functions applied to elementsets in a 'BiocSet' object
left_join_set Functions applied to sets in a 'BiocSet' object
mapping_element Functions for mapping elements in the element tibble to different id types
mapping_set Functions for mapping sets in the set tibble to different id types
map_add_element Functions for mapping elements in the element tibble to different id types
map_add_set Functions for mapping sets in the set tibble to different id types
map_multiple Functions for mapping elements in the element tibble to different id types
map_set Functions for mapping sets in the set tibble to different id types
map_unique Functions for mapping elements in the element tibble to different id types
mutate_element Functions applied to elements in a 'BiocSet' object
mutate_elementset Functions applied to elementsets in a 'BiocSet' object
mutate_set Functions applied to sets in a 'BiocSet' object
OBOSet OBOSet class
OBOSet-class OBOSet class
oboset_element_ancestors Functions to display relationships of an 'OBOSet' object
oboset_element_children Functions to display relationships of an 'OBOSet' object
oboset_element_parents Functions to display relationships of an 'OBOSet' object
oboset_set_ancestors Functions to display relationships of an 'OBOSet' object
oboset_set_children Functions to display relationships of an 'OBOSet' object
oboset_set_parents Functions to display relationships of an 'OBOSet' object
obo_relations Functions to display relationships of an 'OBOSet' object
select_element Functions applied to elements in a 'BiocSet' object
select_elementset Functions applied to elementsets in a 'BiocSet' object
select_set Functions applied to sets in a 'BiocSet' object
set_funs Functions applied to sets in a 'BiocSet' object
show-method BiocSet class
summarise_element Functions applied to elements in a 'BiocSet' object
summarise_elementset Functions applied to elementsets in a 'BiocSet' object
summarise_set Functions applied to sets in a 'BiocSet' object
tibble_from_element Functions applied to elements in a 'BiocSet' object
tibble_from_elementset Functions applied to elementsets in a 'BiocSet' object
tibble_from_set Functions applied to sets in a 'BiocSet' object
union_single Union on a single 'BiocSet' object
url_ref Functions to access reference urls for different identifiers
url_ref_element Functions to access reference urls for different identifiers
url_ref_set Functions to access reference urls for different identifiers