GeneOverlap

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see GeneOverlap.

Test and visualize gene overlaps

Bioconductor version: 3.18

Test two sets of gene lists and visualize the results.

Author: Li Shen, Icahn School of Medicine at Mount Sinai <shenli.sam at gmail.com>

Maintainer: Ant<c3><b3>nio Miguel de Jesus Domingues, Max-Planck Institute for Cell Biology and Genetics <amjdomingues at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneOverlap")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")

Testing and visualizing gene overlaps with the "GeneOverlap" package	PDF	R Script
Reference Manual	PDF

biocViews	MultipleComparison, Software, Visualization
Version	1.38.0
In Bioconductor since	BioC 2.14 (R-3.1) (10 years)
License	GPL-3
Depends
Imports	stats, RColorBrewer, gplots, methods
System Requirements
URL	http://shenlab-sinai.github.io/shenlab-sinai/

Suggests	RUnit, BiocGenerics, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	ATACCoGAPS
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	GeneOverlap_1.38.0.tar.gz
Windows Binary	GeneOverlap_1.38.0.zip
macOS Binary (x86_64)	GeneOverlap_1.38.0.tgz
macOS Binary (arm64)	GeneOverlap_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneOverlap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneOverlap
Bioc Package Browser	https://code.bioconductor.org/browse/GeneOverlap/
Package Short Url	https://bioconductor.org/packages/GeneOverlap/
Package Downloads Report	Download Stats