CNORode
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see CNORode.
ODE add-on to CellNOptR
Bioconductor version: 3.18
Logic based ordinary differential equation (ODE) add-on to CellNOptR.
Author: David Henriques, Thomas Cokelaer, Attila Gabor, Federica Eduati, Enio Gjerga
Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>
Citation (from within R, enter
citation("CNORode")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNORode")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNORode")| Training Signalling Pathway Maps to Biochemical Data with Logic-Based Ordinary Differential Equations | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bioinformatics, CellBasedAssays, CellBiology, ImmunoOncology, Proteomics, Software, TimeCourse |
| Version | 1.44.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL-2 |
| Depends | CellNOptR, genalg, knitr |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | MEIGOR, doParallel, foreach |
| Depends On Me | MEIGOR |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CNORode_1.44.0.tar.gz |
| Windows Binary | CNORode_1.44.0.zip (64-bit only) |
| macOS Binary (x86_64) | CNORode_1.44.0.tgz |
| macOS Binary (arm64) | CNORode_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CNORode |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CNORode |
| Bioc Package Browser | https://code.bioconductor.org/browse/CNORode/ |
| Package Short Url | https://bioconductor.org/packages/CNORode/ |
| Package Downloads Report | Download Stats |