BiocBook
Write, containerize, publish and version Quarto books with Bioconductor
Bioconductor version: Release (3.18)
A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
citation("BiocBook")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocBook")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocBook")| BiocBook | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Infrastructure, ReportWriting, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.3) |
| Imports | BiocGenerics, available, cli, glue, gert, gh, gitcreds, httr, usethis, dplyr, purrr, tibble, methods, rprojroot, stringr, yaml, tools, utils, rlang, quarto, renv |
| System Requirements | |
| URL | https://bioconductor.org/packages/BiocBook |
| Bug Reports | https://github.com/js2264/BiocBook/issues |
See More
| Suggests | BiocStyle, knitr, testthat (>= 3.0.0), rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocBook_1.0.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | BiocBook_1.0.0.tgz |
| macOS Binary (arm64) | BiocBook_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocBook |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocBook |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocBook/ |
| Package Short Url | https://bioconductor.org/packages/BiocBook/ |
| Package Downloads Report | Download Stats |