RNA-seq data analysis using the Poisson-Tweedie family of distributions

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Documentation for package ‘tweeDEseq’ version 1.48.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

compareCountDist	Compare count data distributions
confint.mlePT	Methods for objects of class 'mlePT'
dPT	The Poisson-Tweedie family of distributions
exactTestPT	Exact test for differences between two Poisson-Tweedie groups
filterCounts	Count data filtering
getParam	Maximum likelihood estimation of the Poisson-Tweedie parameters
glmPT	Fit Poisson-Tweedie generalized linear model.
gofTest	Test the goodness of fit of every row in a matrix of counts
logLik.mlePT	Methods for objects of class 'mlePT'
MAplot	Score test for differences between two Poisson-Tweedie groups
MAplot.tweeDE	Score test for differences between two Poisson-Tweedie groups
mlePoissonTweedie	Maximum likelihood estimation of the Poisson-Tweedie parameters
mlePT	Maximum likelihood estimation of the Poisson-Tweedie parameters
normalizeCounts	Count data normalization
print.mlePT	Methods for objects of class 'mlePT'
print.tweeDE	Score test for differences between two Poisson-Tweedie groups
qqchisq	Chi-square quantile-quantile plot
rPT	The Poisson-Tweedie family of distributions
seizure	Epileptic seizure counts
testPoissonTweedie	Score test for differences between two Poisson-Tweedie groups
testShapePT	Test shape parameter of PT
tweeDE	Score test for differences between two Poisson-Tweedie groups
tweeDEglm	Fit Poisson-Tweedie generalized linear model.
tweeDExact	Exact test for differences between two Poisson-Tweedie groups
Vplot	Score test for differences between two Poisson-Tweedie groups
Vplot.tweeDE	Score test for differences between two Poisson-Tweedie groups