Clustering for Flow Cytometry

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Documentation for package ‘flowClust’ version 3.40.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

flowClust-package	Clustering for Flow Cytometry
%in%-method	Creating Filters and Filtering Flow Cytometry Data
BIC	Extract the BIC for a flowClust fit.
BIC.flowClust	Extract the BIC for a flowClust fit.
BIC.flowClustList	Extract the BIC for a flowClust fit.
box	Box-Cox Transformation
criterion	Various Functions for Retrieving Information from Clustering Results
criterion-method	Various Functions for Retrieving Information from Clustering Results
criterion<-	Various Functions for Retrieving Information from Clustering Results
criterion<--method	Various Functions for Retrieving Information from Clustering Results
density-method	Grid of Density Values for the Fitted t Mixture Model with Box-Cox Transformation
density.flowClust	Grid of Density Values for the Fitted t Mixture Model with Box-Cox Transformation
dmvt	Density of the Multivariate t Distribution with Box-Cox Tranformation
dmvtmix	Density of the Multivariate t Mixture Distribution with Box-Cox Tranformation
flowClust	Robust Model-based Clustering for Flow Cytometry
flowClust-class	Robust Model-based Clustering for Flow Cytometry
flowClust.den	generate the curve that reflects the tmixture fitting outcome
flowClustList-class	Robust Model-based Clustering for Flow Cytometry
flowDens-class	Grid of Density Values for the Fitted t Mixture Model with Box-Cox Transformation
fowClust	Robust Model-based Clustering for Flow Cytometry
getEstimates	Various Functions for Retrieving Information from Clustering Results
hist.flowClust	1-D Density Plot (Histogram) of Clustering Results
hist.flowClustList	1-D Density Plot (Histogram) of Clustering Results
importance	Various Functions for Retrieving Information from Clustering Results
length-method	Creating Filters and Filtering Flow Cytometry Data
Map	Cluster Assignment Based on Clustering Results
Map-method	Cluster Assignment Based on Clustering Results
Map.flowClust	Cluster Assignment Based on Clustering Results
plot	Scatterplot of Clustering Results
plot-method	Scatterplot of Clustering Results
plot-method	Scatterplot / 1-D Density Plot of Filtering (Clustering) Results
plot-method	Contour or Image Plot of Clustering Results
plot.flowDens	Contour or Image Plot of Clustering Results
plot.flowFrame	Scatterplot / 1-D Density Plot of Filtering (Clustering) Results
plot.flowFrame.tmixFilterResult	Scatterplot / 1-D Density Plot of Filtering (Clustering) Results
plot.tmixFilterResult	Scatterplot / 1-D Density Plot of Filtering (Clustering) Results
posterior	Various Functions for Retrieving Information from Clustering Results
rbox	Reverse Box-Cox Transformation
rituximab	The Rituximab Dataset
ruleOutliers	Showing or Modifying the Rule used to Identify Outliers
ruleOutliers-method	Showing or Modifying the Rule used to Identify Outliers
ruleOutliers.flowClust	Showing or Modifying the Rule used to Identify Outliers
ruleOutliers<-	Showing or Modifying the Rule used to Identify Outliers
ruleOutliers<--method	Showing or Modifying the Rule used to Identify Outliers
show-method	Show Method for flowClust / tmixFilterResult Object
show.flowClust	Show Method for flowClust / tmixFilterResult Object
show.tmixFilterResult	Show Method for flowClust / tmixFilterResult Object
split	Splitting Data Based on Clustering Results
split-method	Splitting Data Based on Clustering Results
split.flowClust	Splitting Data Based on Clustering Results
split.flowFrame	Splitting Data Based on Clustering Results
split.tmixFilterResult	Splitting Data Based on Clustering Results
Subset	Subsetting Data Based on Clustering Results
Subset-method	Subsetting Data Based on Clustering Results
Subset.flowClust	Subsetting Data Based on Clustering Results
Subset.flowFrame	Subsetting Data Based on Clustering Results
Subset.flowFrame.tmixFilterResult	Subsetting Data Based on Clustering Results
Subset.tmixFilterResult	Subsetting Data Based on Clustering Results
summarizeFilter-method	Creating Filters and Filtering Flow Cytometry Data
summary	Summary Method for flowClust Object
summary-method	Summary Method for flowClust Object
summary.flowClust	Summary Method for flowClust Object
summary.tmixFilterResult	Summary Method for flowClust Object
tmixFilter	Creating Filters and Filtering Flow Cytometry Data
tmixFilter-class	Creating Filters and Filtering Flow Cytometry Data
tmixFilterResult-class	Creating Filters and Filtering Flow Cytometry Data
tmixFilterResultList	Creating Filters and Filtering Flow Cytometry Data
tmixFilterResultList-class	Creating Filters and Filtering Flow Cytometry Data
uncertainty	Various Functions for Retrieving Information from Clustering Results
[-method	Creating Filters and Filtering Flow Cytometry Data
[[-method	Creating Filters and Filtering Flow Cytometry Data