dyebias-package |
The GASSCO method for correcting for slide-dependent gene-specific dye bias |
dyebias |
The GASSCO method for correcting for slide-dependent gene-specific dye bias |
dyebias.application.subset |
Return a subset of reporters that can be dye bias-corrected reasonably well |
dyebias.apply.correction |
Perform dye bias correction using the GASSCO method |
dyebias.boxplot |
Creates boxplots of the reporters with the strongest dye bias |
dyebias.estimate.iGSDBs |
Estimate intrinsic gene specific dye biases (part of the GASSCO method) |
dyebias.maplot |
Produce scatterplots of the hybridization, with strongest dye biases highlighted. |
dyebias.monotonicity |
Calculate the degree of monotonicity of the dye bias across the slides. DEPRACATED |
dyebias.monotonicityplot |
Show the degree of monotonicity of the dye bias across the slides. DEPRACATED |
dyebias.rgplot |
Produce scatterplots of the hybridization, with strongest dye biases highlighted. |
dyebias.trendplot |
Creates a trend-plot of all reporters, binned by dye bias, with all slides ordered by slide bias. |