Identification of cancer cell lines based on their weighted
mutational/ variational fingerprint
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Documentation for package ‘Uniquorn’ version 2.22.0
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| add_custom_vcf_to_database | add_custom_vcf_to_database This function adds the variants of parsed custom CCLs to a monet DB instance |
| add_missing_cls | add_missing_cls |
| add_penalty_statistics | add_penalty_statistics |
| add_p_q_values_statistics | add_p_q_values_statistics |
| create_bed_file | create_bed_file |
| identify_vcf_file | identify_VCF_file |
| initiate_canonical_databases | initiate_canonical_databases |
| init_and_load_identification | init_and_load_identification |
| match_query_ccl_to_database | match_query_ccl_to_database |
| parse_vcf_file | Filter Parsed VCF Files |
| parse_vcf_query_into_db | parse_vcf_query_into_db This function adds the variants of parsed custom CCLs to a monet DB instance |
| read_library_names | Library Name Reader |
| read_mutation_grange_objects | read_mutation_grange_objects |
| remove_ccls_from_database | Remove Cancer Cell Line |
| remove_library_from_database | Remove entire Library from Database |
| show_contained_ccls | show_contained_ccls |
| show_contained_variants_for_ccl | Variants In Cancer Cell Line |
| show_contained_variants_in_library | All variants contained in reference library |
| show_which_ccls_contain_variant | Cancer cell lines with specific variant |