Identification of cancer cell lines based on their weighted mutational/ variational fingerprint


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Documentation for package ‘Uniquorn’ version 2.22.0

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add_custom_vcf_to_database add_custom_vcf_to_database This function adds the variants of parsed custom CCLs to a monet DB instance
add_missing_cls add_missing_cls
add_penalty_statistics add_penalty_statistics
add_p_q_values_statistics add_p_q_values_statistics
create_bed_file create_bed_file
identify_vcf_file identify_VCF_file
initiate_canonical_databases initiate_canonical_databases
init_and_load_identification init_and_load_identification
match_query_ccl_to_database match_query_ccl_to_database
parse_vcf_file Filter Parsed VCF Files
parse_vcf_query_into_db parse_vcf_query_into_db This function adds the variants of parsed custom CCLs to a monet DB instance
read_library_names Library Name Reader
read_mutation_grange_objects read_mutation_grange_objects
remove_ccls_from_database Remove Cancer Cell Line
remove_library_from_database Remove entire Library from Database
show_contained_ccls show_contained_ccls
show_contained_variants_for_ccl Variants In Cancer Cell Line
show_contained_variants_in_library All variants contained in reference library
show_which_ccls_contain_variant Cancer cell lines with specific variant