Import Data from Various Mass Spectrometry Signal Processing
Tools to MSstats Format
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Documentation for package ‘MSstatsConvert’ version 1.12.1
Help Pages
| MSstatsConvert-package | MSstatsConvert: An R Package to Convert Data from Mass Spectrometry Signal Processing Tools to MSstats Format |
| .cleanRawPD | Clean raw Proteome Discoverer data |
| .validatePDTMTInputColumns | Helper method to validate input has necessary columns |
| as.data.frame.MSstatsValidated | Convert output of converters to data.frame |
| as.data.table.MSstatsValidated | Convert output of converters to data.table |
| getInputFile | Get one of files contained in an instance of 'MSstatsInputFiles' class. |
| getInputFile-method | Get one of files contained in an instance of 'MSstatsInputFiles' class. |
| MetamorpheusToMSstatsFormat | Import Metamorpheus files |
| MSstatsBalancedDesign | Creates balanced design by removing overlapping fractions and filling incomplete rows |
| MSstatsClean | Clean files generated by a signal processing tools. |
| MSstatsClean-method | Clean files generated by a signal processing tools. |
| MSstatsConvert | MSstatsConvert: An R Package to Convert Data from Mass Spectrometry Signal Processing Tools to MSstats Format |
| MSstatsImport | Import files from signal processing tools. |
| MSstatsLogsSettings | Set how MSstats will log information from data processing |
| MSstatsMakeAnnotation | Create annotation |
| MSstatsPreprocess | Preprocess outputs from MS signal processing tools for analysis with MSstats |
| MSstatsSaveSessionInfo | Save session information |