Analysing cool files in R with HiContacts
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Documentation for package ‘HiContacts’ version 1.4.0
Help Pages
| afmhotrColors | Matrix palettes |
| aggregate-method | HiContacts arithmetics functionalities |
| arithmetics | HiContacts arithmetics functionalities |
| autocorrelate | HiContacts arithmetics functionalities |
| bbrColors | Matrix palettes |
| bgrColors | Matrix palettes |
| boost | HiContacts arithmetics functionalities |
| bwrColors | Matrix palettes |
| cisTransRatio | cisTransRatio |
| coarsen | HiContacts arithmetics functionalities |
| Contacts | Contacts |
| coolerColors | Matrix palettes |
| coverage-method | Aligning tracks with HiCExperiment objects |
| despeckle | HiContacts arithmetics functionalities |
| detrend | HiContacts arithmetics functionalities |
| distanceLaw | Compute the law of distance-dependent contact frequency, a.k.a. P(s) |
| distanceLaw-method | Compute the law of distance-dependent contact frequency, a.k.a. P(s) |
| divide | HiContacts arithmetics functionalities |
| getBorders | Contact map insulation |
| getCompartments | Contact map compartments |
| getDiamondInsulation | Contact map insulation |
| getLoops | Finding loops in contact map |
| HiContacts-plots | HiContacts plotting functionalities |
| localDistanceLaw | Compute the law of distance-dependent contact frequency, a.k.a. P(s) |
| merge-method | HiContacts arithmetics functionalities |
| montage | Plotting a contact matrix |
| montage-method | Plotting a contact matrix |
| normalize-method | HiContacts arithmetics functionalities |
| palettes | Matrix palettes |
| plot4C | Plotting virtual 4C profiles |
| plotMatrix | Plotting a contact matrix |
| plotMatrix-method | Plotting a contact matrix |
| plotPs | Plotting a P(s) distance law |
| plotPsSlope | Plotting a P(s) distance law |
| plotSaddle | Plotting saddle plots |
| plotScalogram | Plotting scalograms |
| Ps | Compute the law of distance-dependent contact frequency, a.k.a. P(s) |
| rainbowColors | Matrix palettes |
| scalogram | Compute a scalogram of contacts |
| subsample | HiContacts arithmetics functionalities |
| tracks | Aligning tracks with HiCExperiment objects |
| virtual4C | Computing virtual 4C profiles |