GeneRegionScan


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Documentation for package ‘GeneRegionScan’ version 1.58.0

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addSnpPdata Add SNP data from hapmap-style data file to pData of ExpressionSet
addSnpPdata-method Add SNP data from hapmap-style data file to pData of ExpressionSet
checkForFileInPath Check For File In Path
doProbeLinear Do Probe Linear
doProbeTTest Do Probe T-Test
exampleProbeLevelSet Example Dataset of class 'ProbeLevelSet'
excludeDoubleMatchingProbes Exclude ProbeLevelSet probes that match more than once in genome
excludeDoubleMatchingProbes-method Exclude ProbeLevelSet probes that match more than once in genome
exonStructure Add exon-structure to plots
findProbePositions Find positions of probes on a gene
findProbePositions-method Find positions of probes on a gene
findSequenceInGenome Find a sequence in genome
GeneRegionScan Gene Region Scan
geneRegionScan Gene Region Scan
geneRegionScan-method Gene Region Scan
genomic genomic sequence of gene in ProbeLevelSet
getLocalMetaprobeIntensities Get Metaprobe Intensities locally
getLocalProbeIntensities Get Probe Intensities locally
getMetaprobesetsFromRegionOfInterest Get Meta Probe Set IDs From Region Of Interest
getProbeLevelAnnotationForExonArrays Get ProbeLevel Annotation for Exon Arrays
getProbesetsFromMetaprobeset Get Probeset IDs From metaprobeset IDs
getProbesetsFromRegionOfInterest Get Probeset IDs From Region Of Interest
getSequence Get Sequence from a ProbeLevelSet
getSequence-method Get Sequence from a ProbeLevelSet
getServerProbeIntensities Get Probe Intensities from a server
mrna mRNA sequence of gene in ProbeLevelSet
plotCoexpression Plot Coexpression of probes in a ProbeLevelSet
plotCoexpression-method Plot Coexpression of probes in a ProbeLevelSet
plotOnGene Plot probe level data on a gene
plotOnGene-method Plot probe level data on a gene
plotStatistics Plot Statistics
ProbeLevelSet Class ProbeLevelSet
ProbeLevelSet-class Class ProbeLevelSet
readGeneInput Standardize reading of gene inputs
translateSampleNames Translate sample names using translation file
translateSampleNames-method Translate sample names using translation file