GeneRegionScan

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Documentation for package ‘GeneRegionScan’ version 1.58.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

addSnpPdata	Add SNP data from hapmap-style data file to pData of ExpressionSet
addSnpPdata-method	Add SNP data from hapmap-style data file to pData of ExpressionSet
checkForFileInPath	Check For File In Path
doProbeLinear	Do Probe Linear
doProbeTTest	Do Probe T-Test
exampleProbeLevelSet	Example Dataset of class 'ProbeLevelSet'
excludeDoubleMatchingProbes	Exclude ProbeLevelSet probes that match more than once in genome
excludeDoubleMatchingProbes-method	Exclude ProbeLevelSet probes that match more than once in genome
exonStructure	Add exon-structure to plots
findProbePositions	Find positions of probes on a gene
findProbePositions-method	Find positions of probes on a gene
findSequenceInGenome	Find a sequence in genome
GeneRegionScan	Gene Region Scan
geneRegionScan	Gene Region Scan
geneRegionScan-method	Gene Region Scan
genomic	genomic sequence of gene in ProbeLevelSet
getLocalMetaprobeIntensities	Get Metaprobe Intensities locally
getLocalProbeIntensities	Get Probe Intensities locally
getMetaprobesetsFromRegionOfInterest	Get Meta Probe Set IDs From Region Of Interest
getProbeLevelAnnotationForExonArrays	Get ProbeLevel Annotation for Exon Arrays
getProbesetsFromMetaprobeset	Get Probeset IDs From metaprobeset IDs
getProbesetsFromRegionOfInterest	Get Probeset IDs From Region Of Interest
getSequence	Get Sequence from a ProbeLevelSet
getSequence-method	Get Sequence from a ProbeLevelSet
getServerProbeIntensities	Get Probe Intensities from a server
mrna	mRNA sequence of gene in ProbeLevelSet
plotCoexpression	Plot Coexpression of probes in a ProbeLevelSet
plotCoexpression-method	Plot Coexpression of probes in a ProbeLevelSet
plotOnGene	Plot probe level data on a gene
plotOnGene-method	Plot probe level data on a gene
plotStatistics	Plot Statistics
ProbeLevelSet	Class ProbeLevelSet
ProbeLevelSet-class	Class ProbeLevelSet
readGeneInput	Standardize reading of gene inputs
translateSampleNames	Translate sample names using translation file
translateSampleNames-method	Translate sample names using translation file