Downloads ENA Fastqs With GEO Accessions
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Documentation for package ‘GEOfastq’ version 1.10.0
Help Pages
| crawl_gse | Get GSE text from GEO |
| crawl_gsms | Crawls SRX pages for each GSM to get metadata. |
| extract_gsms | Extract GSMs needed to download RNA-seq data for a series |
| get_dldir | Gets part of path to download bulk RNAseq sample from EBI or NCBI |
| get_fastqs | Download and RNA-seq fastq data from EBI |