BLMA: A package for bi-level meta-analysis

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Documentation for package ‘BLMA’ version 1.26.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

addCLT	The additive method for meta-analysis
bilevelAnalysisClassic	Bi-level meta-analysis in conjunction with a classical hypothesis testing method
bilevelAnalysisGene	Bi-level meta-analysis of multiple expression datasets at the gene-level
bilevelAnalysisGeneset	Bi-level meta-analysis - applied to geneset enrichment analysis
bilevelAnalysisPathway	Bi-level meta-analysis - applied to pathway analysis
data_GSE17054	Gene expression dataset GSE17054 from Majeti et al.
data_GSE33223	Gene expression dataset GSE33223 from Bacher et al.
data_GSE42140	The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
data_GSE57194	Gene expression dataset GSE57194 from Abdul-Nabi et al.
fisherMethod	Fisher's method for meta-analysis
getStatistics	Intergrative genes statistic
group_GSE17054	Gene expression dataset GSE17054 from Majeti et al.
group_GSE33223	Gene expression dataset GSE33223 from Bacher et al.
group_GSE42140	The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
group_GSE57194	Gene expression dataset GSE57194 from Abdul-Nabi et al.
GSE17054	Gene expression dataset GSE17054 from Majeti et al.
GSE33223	Gene expression dataset GSE33223 from Bacher et al.
GSE42140	The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
GSE57194	Gene expression dataset GSE57194 from Abdul-Nabi et al.
intraAnalysisClassic	Intra-experiment analysis in conjunction with classical hypothesis tests
intraAnalysisGene	Intra-experiment analysis of an expression dataset at the gene-level
loadKEGGPathways	Load KEGG pathways and names
pORACalc	Over-representation Analysis
stoufferMethod	Stouffer's method for meta-analysis