multiWGCNA

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Documentation for package ‘multiWGCNA’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bidirectionalBestMatches	Best matching modules
cleanDatExpr	cleanDatExpr
coexpressionLineGraph	Coexpression Line Graph
computeOverlapsFromWGCNA	computeOverlapsFromWGCNA
constructNetworks	constructNetworks: Construct all the weighted gene correlation networks
diffCoexpression	Differential co-expresison analysis
diffModuleExpression	Differential module expression
drawMultiWGCNAnetwork	Draw multiWGCNA network
GetDatExpr	Get expression data
getPreservation	getPreservation
iterate	iterate: Iterate function across networks
makeTraitTable	Generate a trait table from a sample table
moduleComparisonPlot	Module comparison plot
moduleExpressionPlot	Plots an expression profile for a module
moduleToModuleHeatmap	Module to module heatmap
name	name: Name of WGCNAobject
overlapComparisons	Overlap comparisons
performANOVA	Perform ANOVA
preservationComparisonPlot	Preservation Comparison Scatterplot
preservationComparisons	Preservation comparisons
runDME	Run differential module expression
summarizeResults	summarizeResults: Summarize results from a results list object
topNGenes	topNGenes: Top N genes of a module
WGCNA-class	The WGCNA Class