Evaluation of Bioinformatics Metrics


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Documentation for package ‘evaluomeR’ version 1.18.0

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bioMetrics Dataset: Metrics for biological pathways
evaluomeRSupportedCBI Get supported CBIs in evaluomeR.
getDataQualityRange Dataframe getter for 'qualityRange' function.
getOptimalKValue Calculating the optimal value of k. getOptimalKValue
globalMetric Global metric score defined by a prediction.
metricsCorrelations Calculation of Pearson correlation coefficient.
ontMetrics Dataset: Structural ontology metrics
plotMetricsBoxplot Metric values as a boxplot.
plotMetricsCluster Metric values clustering.
plotMetricsClusterComparison Comparison between two clusterings as plot. plotMetricsClusterComparison
plotMetricsMinMax Minimum and maximum metric values plot.
plotMetricsViolin Metric values as violin plot.
quality Goodness of classifications.
qualityRange Goodness of classifications for a range of k clusters.
qualitySet Goodness of classifications for a set of k clusters.
rnaMetrics Dataset: RNA quality metrics
stability Stability index.
stabilityRange Stability index for a range of k clusters.
stabilitySet Stability index for a set of k clusters.