Correspondence Analysis for Single Cell Data


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Documentation for package ‘corral’ version 1.12.0

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add_embeddings2scelist Add embeddings to list of SCEs
all_are all_are
biplot_corral Generate biplot for corral object
compsvd compsvd: Compute Singular Value Decomposition (SVD)
corral corral: Correspondence analysis on a single matrix
corralm Multi-table correspondence analysis (list of matrices)
corralm_matlist Multi-table correspondence analysis (list of matrices)
corralm_sce Multi-table correspondence analysis (list of matrices)
corral_mat corral: Correspondence analysis on a single matrix
corral_preproc Preprocess a matrix for SVD to perform Correspondence Analysis (CA)
corral_sce corral: Correspondence analysis on a single matrix
earthmover_dist Earthmover distance (and general Wasserstein distance)
get_pct_var_exp_svd Compute percent of variance explained
get_weights Get weights
list2mat List to Matrix
na2zero Set na to 0
pairwise_rv Pairwise rv coefficient
plot_embedding Plot selected PCs from an embedding
plot_embedding_sce Plot selected PCs from an embedding saved in a SingleCellExperiment object
print.corral corral: Correspondence analysis on a single matrix
print.corralm Multi-table correspondence analysis (list of matrices)
rv rv coefficient
scal_var Generate a scaled variance plot for an integrative embedding
scal_var_mat Generate a matrix of the scaled variance values
sce2matlist SingleCellExperiment to list of matrices
trim_matdist Trim extreme values in a pre-processed matrix
var_stabilize Apply a variance stabilizing transformation