Find chromosome regions showing common gains/losses

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Documentation for package ‘cghMCR’ version 1.60.0

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cghMCR The constructor for the cghMCR class
cghMCR-class Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
colnames-method Methods for Function colnames/rownames in Package 'cghMCR'
colnames-methods Methods for Function colnames/rownames in Package 'cghMCR'
getSegments Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments-method Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
gol Class "SGOL" reprents segments of gain or loss across samples
gol-method Class "SGOL" reprents segments of gain or loss across samples
MCR Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
MCR-method Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
mergeMCRProbes A function that appends probe ids to a data frame containing MCRs
method-method Class "SGOL" reprents segments of gain or loss across samples
plot Class "SGOL" reprents segments of gain or loss across samples
plot,methods Class "SGOL" reprents segments of gain or loss across samples
plot-method Class "SGOL" reprents segments of gain or loss across samples
plot.DNAcopy A function to plot the original data along with the segments identified using segment of DNAcopy.
rownames-method Methods for Function colnames/rownames in Package 'cghMCR'
rownames-methods Methods for Function colnames/rownames in Package 'cghMCR'
segData The constructor for the cghMCR class
SGOL Class "SGOL" reprents segments of gain or loss across samples
SGOL-class Class "SGOL" reprents segments of gain or loss across samples
threshold-method Class "SGOL" reprents segments of gain or loss across samples
[-method Methods for Function colnames/rownames in Package 'cghMCR'
[-methods Methods for Function colnames/rownames in Package 'cghMCR'