An R/shiny package for microbiome functional enrichment analysis

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Documentation for package ‘MicrobiomeProfiler’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

MicrobiomeProfiler-package	Functional enrichment analysis for microbiome data
enrichCOG	COG enrichment analysis for microbiome data
enrichHMDB	Metabolism enrichment analysis for microbiome data
enrichKO	KO enrichment for microbiome data
enrichMBKEGG	Metabolism enrichment analysis for microbiome data
enrichMDA	Microbe-Disease associations enrichment analysis
enrichModule	Module enrichment for microbiome data
enrichSMPDB	Metabolism enrichment analysis for microbiome data
gson_cpd	gson_cpd
gson_enzyme	gson_enzyme
gson_KO	gson_KO
gson_module	gson_module
MicrobiomeProfiler	Functional enrichment analysis for microbiome data
microbiota_data	Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples
microbiota_taxlist	Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples
Psoriasis_data	Example data: a vector of 134 significantly different functional COGs between Psoriasis patients and controls
Rat_data	Example data: a vector of 91 KEGG Orthologies (KOs) showing significant associations with weaning weight
run_MicrobiomeProfiler	Run the Shiny Application