DOI: 10.18129/B9.bioc.tissueTreg  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see tissueTreg.

TWGBS and RNA-seq data from tissue T regulatory cells from mice

Bioconductor version: 3.17

The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.

Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]

Maintainer: Charles Imbusch <c.imbusch at dkfz.de>

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biocViews ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue
Version 1.20.0
License GPL (>= 2)
Depends R (>= 3.5)
Suggests BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment
URL https://github.com/cimbusch/tissueTreg
Depends On Me
Imports Me
Suggests Me DMRcate
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Source Package tissueTreg_1.20.0.tar.gz
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Package Short Url https://bioconductor.org/packages/tissueTreg/
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