DOI: 10.18129/B9.bioc.gDNAinRNAseqData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see gDNAinRNAseqData.

RNA-seq data with different levels of gDNA contamination

Bioconductor version: 3.17

Provides access to BAM files generated from RNA-seq data produced with different levels of gDNA contamination. It currently allows one to download a subset of the data published by Li et al., BMC Genomics, 23:554, 2022. This subset of data is formed by BAM files with about 100,000 alignments with three different levels of gDNA contamination.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at>

Citation (from within R, enter citation("gDNAinRNAseqData")):


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biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData
Version 1.0.0
License Artistic-2.0
Depends R (>= 4.3)
Imports RCurl, XML, ExperimentHub, BiocGenerics, Rsamtools
Suggests BiocStyle, knitr, rmarkdown
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