fourDNData

DOI: 10.18129/B9.bioc.fourDNData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see fourDNData.

4DN data package

Bioconductor version: 3.17

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fourDNData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fourDNData")

 

HTML	R Script	fourDNData
PDF		Reference Manual
Text		LICENSE

Details

biocViews	ExperimentData, SequencingData
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 4.2)
Imports	BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools
LinkingTo
Suggests	rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/js2264/fourDNData
BugReports	https://github.com/js2264/fourDNData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fourDNData_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/fourDNData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/fourDNData
Package Short Url	https://bioconductor.org/packages/fourDNData/
Package Downloads Report	Download Stats