ewceData

DOI: 10.18129/B9.bioc.ewceData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ewceData.

The ewceData package provides reference data required for ewce

Bioconductor version: 3.17

This package provides reference data required for ewce. Expression Weighted Celltype Enrichment (EWCE) is used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

Author: Alan Murphy [cre] , Nathan Skene [aut]

Maintainer: Alan Murphy <alanmurph94 at hotmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ewceData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ewceData")

 

HTML	R Script	Data package for Expression Weighted Celltype Enrichment EWCE
PDF		Reference Manual

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Genome, MicroarrayData, Proteome, RNASeqData, SequencingData, SingleCellData
Version	1.8.0
License	Artistic-2.0
Depends	R (>= 4.1), ExperimentHub
Imports
LinkingTo
Suggests	knitr, BiocStyle, ggplot2, cowplot, rmarkdown, markdown, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL	https://github.com/neurogenomics/ewceData
Depends On Me
Imports Me	EWCE
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ewceData_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ewceData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ewceData
Package Short Url	https://bioconductor.org/packages/ewceData/
Package Downloads Report	Download Stats