chipseqDBData

DOI: 10.18129/B9.bioc.chipseqDBData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see chipseqDBData.

Data for the chipseqDB Workflow

Bioconductor version: 3.17

Sorted and indexed BAM files for ChIP-seq libraries, for use in the chipseqDB workflow. BAM indices are also included.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chipseqDBData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseqDBData")

 

HTML	R Script	File manifest and statistics
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeqData, ExperimentData, ExperimentHub, SequencingData
Version	1.16.0
License	CC BY 4.0
Depends
Imports	AnnotationHub, ExperimentHub, Rsamtools, S4Vectors
LinkingTo
Suggests	knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me	csawBook
Imports Me
Suggests Me	chipseqDB
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chipseqDBData_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/chipseqDBData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chipseqDBData
Package Short Url	https://bioconductor.org/packages/chipseqDBData/
Package Downloads Report	Download Stats