SimBenchData

DOI: 10.18129/B9.bioc.SimBenchData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SimBenchData.

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Bioconductor version: 3.17

The SimBenchData package contains a total of 35 single-cell RNA-seq datasets covering a wide range of data characteristics, including major sequencing protocols, multiple tissue types, and both human and mouse sources.

Author: Yue Cao [aut, cre], Pengyi Yang [aut], Jean Yee Hwa Yang [aut]

Maintainer: Yue Cao <ycao6928 at uni.sydney.edu.au>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SimBenchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SimBenchData")

 

HTML	R Script	SimBenchData: a collection of single-cell RNA-seq data covering a wide range of data characteristics
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, RNASeqData, SequencingData, SingleCellData, Tissue
Version	1.8.0
License	GPL-3
Depends	ExperimentHub
Imports	S4Vectors, utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, Seurat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SimBenchData_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SimBenchData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SimBenchData
Package Short Url	https://bioconductor.org/packages/SimBenchData/
Package Downloads Report	Download Stats