DOI: 10.18129/B9.bioc.SFEData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SFEData.

Example SpatialFeatureExperiment datasets

Bioconductor version: 3.17

Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.

Author: Lambda Moses [aut, cre] , Kayla Jackson [aut] , Lior Pachter [aut, ths]

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("SFEData")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Example SpatialFeatureExperiment datasets
PDF   Reference Manual
Text   NEWS


biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, SingleCellData, SpatialData, Tissue
Version 1.2.0
License Artistic-2.0
Imports BiocFileCache, AnnotationHub, ExperimentHub
Suggests BiocStyle, knitr, rmarkdown, SpatialFeatureExperiment, testthat (>= 3.0.0)
URL https://github.com/pachterlab/SFEData
BugReports https://github.com/pachterlab/SFEData/issues
Depends On Me
Imports Me
Suggests Me SpatialFeatureExperiment, Voyager
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SFEData_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SFEData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SFEData
Package Short Url https://bioconductor.org/packages/SFEData/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: