DOI: 10.18129/B9.bioc.MetaScope  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see MetaScope.

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Bioconductor version: 3.17

This package contains tools and methods for preprocessing microbiome data. Functionality includes library generation, demultiplexing, alignment, and microbe identification. It is partly an R translation of the PathoScope 2.0 pipeline.

Author: Aubrey Odom-Mabey [aut, cre] , Rahul Varki [aut], W. Evan Johnson [aut] , Howard Fan [ctb]

Maintainer: Aubrey Odom-Mabey <aodom at>

Citation (from within R, enter citation("MetaScope")):


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biocViews ExperimentData, MicrobiomeData, ReproducibleResearch, SequencingData
Version 1.0.0
License GPL (>= 3)
Depends R (>= 4.2.0)
Imports BiocFileCache, Biostrings, data.table, dplyr, ggplot2, magrittr, Matrix, MultiAssayExperiment, qlcMatrix, R.utils, Rbowtie2, readr, rlang, Rsamtools, S4Vectors, stringr, SummarizedExperiment, taxize, tidyr, tools
Suggests BiocStyle, biomformat, knitr, lintr, plyr, rmarkdown, Rsubread, spelling, sys, testthat, usethis
Enhances BiocParallel
Depends On Me
Imports Me
Suggests Me
Links To Me
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