HiContactsData

DOI: 10.18129/B9.bioc.HiContactsData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see HiContactsData.

HiContacts companion data package

Bioconductor version: 3.17

Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HiContactsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiContactsData")

 

HTML	R Script	HiContactsData
PDF		Reference Manual
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, SequencingData
Version	1.2.0
License	MIT + file LICENSE
Depends	ExperimentHub
Imports	BiocFileCache, AnnotationHub
LinkingTo
Suggests	testthat, methods, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/js2264/HiContactsData
BugReports	https://github.com/js2264/HiContactsData/issues
Depends On Me
Imports Me
Suggests Me	HiCExperiment, HiContacts, HiCool
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HiContactsData_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HiContactsData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HiContactsData
Package Short Url	https://bioconductor.org/packages/HiContactsData/
Package Downloads Report	Download Stats