DOI: 10.18129/B9.bioc.HarmanData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see HarmanData.

Data for the Harman package

Bioconductor version: 3.17

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

Author: Yalchin Oytam [aut], Josh Bowden [aut], Jason Ross [aut, cre]

Maintainer: Jason Ross <jason.ross at csiro.au>

Citation (from within R, enter citation("HarmanData")):


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biocViews ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data
Version 1.28.0
License GPL-3
Depends R (>= 3.5.0)
Suggests BiocGenerics, BiocStyle, knitr, rmarkdown, Harman(>= 1.23.3)
URL http://www.bioinformatics.csiro.au/harman/
Depends On Me
Imports Me
Suggests Me Harman
Links To Me
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Source Package HarmanData_1.28.0.tar.gz
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