GSE62944

DOI: 10.18129/B9.bioc.GSE62944  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see GSE62944.

GEO accession data GSE62944 as a SummarizedExperiment

Bioconductor version: 3.17

TCGA processed RNA-Seq data for 9264 tumor and 741 normal samples across 24 cancer types and made them available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). GSE62944 data have been parsed into a SummarizedExperiment object available in ExperimentHub.

Author: Sonali Arora

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSE62944")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSE62944")

 

HTML	R Script	Raw TCGA data using Bioconductor's ExperimentHub
PDF		Reference Manual

Details

biocViews	DNASeqData, ExperimentData, Genome, RNASeqData
Version	1.28.1
License	Artistic-2.0
Depends	Biobase, GEOquery
Imports
LinkingTo
Suggests	ExperimentHub(>= 0.99.6), knitr, BiocStyle, rmarkdown, DESeq2
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/release/bioc/html/GSE62944.html
Depends On Me
Imports Me
Suggests Me	GSEABenchmarkeR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSE62944_1.28.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/GSE62944
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GSE62944
Package Short Url	https://bioconductor.org/packages/GSE62944/
Package Downloads Report	Download Stats