FlowSorted.CordBloodCombined.450k

DOI: 10.18129/B9.bioc.FlowSorted.CordBloodCombined.450k  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see FlowSorted.CordBloodCombined.450k.

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Bioconductor version: 3.17

Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.

Author: Lucas A. Salas [cre, aut], Kristina Gervin [aut], Meaghan C. Jones [aut], Kelly M. Bakulski [ctb], Devin C. Koestler [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Robert Lyle [ctb], Brock C. Christensen [ctb], Janine Felix [ctb]

Maintainer: Lucas A. Salas <lucas.a.salas.diaz at dartmouth.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FlowSorted.CordBloodCombined.450k")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FlowSorted.CordBloodCombined.450k")

 

HTML	R Script	FlowSorted.CordBloodCombined.450k
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData
Version	1.16.0
License	GPL-3
Depends	R (>= 3.6), minfi(>= 1.21.2), ExperimentHub(>= 1.9.1)
Imports	SummarizedExperiment, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19, utils, AnnotationHub
LinkingTo
Suggests	FlowSorted.Blood.EPIC, knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19
SystemRequirements
Enhances
URL	https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k
BugReports	https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k/issues.
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	FlowSorted.CordBloodCombined.450k_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/FlowSorted.CordBloodCombined.450k
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/FlowSorted.CordBloodCombined.450k
Package Short Url	https://bioconductor.org/packages/FlowSorted.CordBloodCombined.450k/
Package Downloads Report	Download Stats