DNAZooData

DOI: 10.18129/B9.bioc.DNAZooData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see DNAZooData.

DNA Zoo data package

Bioconductor version: 3.17

DNAZooData is a data package giving programmatic access to genome assemblies and Hi-C contact matrices uniformly processed by the [DNA Zoo Consortium](https://www.dnazoo.org/). The matrices are available in the multi-resolution `.hic` format. A URL to corrected genome assemblies in `.fastq` format is also provided to the end-user.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAZooData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAZooData")

 

HTML	R Script	DNAZooData
PDF		Reference Manual
Text		LICENSE

Details

biocViews	ExperimentData, SequencingData
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 4.2), HiCExperiment
Imports	BiocFileCache, S4Vectors, rjson, utils, tools
LinkingTo
Suggests	dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/js2264/DNAZooData
BugReports	https://github.com/js2264/DNAZooData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DNAZooData_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/DNAZooData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DNAZooData
Package Short Url	https://bioconductor.org/packages/DNAZooData/
Package Downloads Report	Download Stats