scAnnotatR.models

DOI: 10.18129/B9.bioc.scAnnotatR.models  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see scAnnotatR.models.

Pretrained models for scAnnotatR package

Bioconductor version: 3.17

Pretrained models for scAnnotatR package. These models can be used to automatically classify several (immune) cell types in human scRNA-seq data.

Author: Vy Nguyen [aut] , Johannes Griss [cre]

Maintainer: Johannes Griss <johannes.griss at meduniwien.ac.at>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scAnnotatR.models")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scAnnotatR.models")

 

HTML	R Script	1. Introduction to scAnnotatR
PDF		Reference Manual
Text		LICENSE

Details

biocViews	AnnotationData, AnnotationHub, FunctionalAnnotation, Homo_sapiens
Version	0.99.10
License	MIT + file LICENSE
Depends	R (>= 4.1)
Imports
LinkingTo
Suggests	scAnnotatR, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scAnnotatR.models_0.99.10.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/scAnnotatR.models/
Package Downloads Report	Download Stats