geneplast.data

DOI: 10.18129/B9.bioc.geneplast.data  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see geneplast.data.

Input data for the geneplast package via AnnotationHub

Bioconductor version: 3.17

The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.

Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut]

Maintainer: Leonardo Campos <leofields at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneplast.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplast.data")

 

HTML	R Script	Supporting data for geneplast evolutionary analyses
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology
Version	0.99.7
License	Artistic-2.0
Depends	R (>= 4.0)
Imports	ape, treeio, tibble, dplyr, readr, purrr, igraph, geneplast, BiocFileCache
LinkingTo
Suggests	geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	geneplast
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	geneplast.data_0.99.7.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/geneplast.data/
Package Downloads Report	Download Stats