SNPlocs.Hsapiens.dbSNP155.GRCh38

DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP155.GRCh38  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP155.GRCh38.

Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh38/hg38 assembly

Bioconductor version: 3.17

The 949,021,448 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version	0.99.24
License	Artistic-2.0
Depends	R (>= 4.2.0), BSgenome(>= 1.67.2)
Imports	methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests	Biostrings, BSgenome.Hsapiens.UCSC.hg38
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	MungeSumstats
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNPlocs.Hsapiens.dbSNP155.GRCh38_0.99.24.tar.gz
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Package Short Url	https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP155.GRCh38/
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