FDb.FANTOM4.promoters.hg19

DOI: 10.18129/B9.bioc.FDb.FANTOM4.promoters.hg19  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see FDb.FANTOM4.promoters.hg19.

Annotation package for FANTOM4 promoters identified from THP-1 cells

Bioconductor version: 3.17

FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified

Author: Tim Triche, Jr.

Maintainer: Tim Triche, Jr. <tim.triche at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FDb.FANTOM4.promoters.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Homo_sapiens
Version	1.0.0
License	Artistic-2.0
Depends	GenomicFeatures(>= 1.7.22), Biostrings
Imports	GenomicFeatures, AnnotationDbi
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19/
Package Downloads Report	Download Stats