BioMartGOGeneSets

DOI: 10.18129/B9.bioc.BioMartGOGeneSets  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see BioMartGOGeneSets.

Gene Ontology Gene Sets from BioMart

Bioconductor version: 3.17

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioMartGOGeneSets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioMartGOGeneSets")

 

HTML	R Script	BioMart Gene Ontology Gene Sets Collections
HTML	R Script	Pre-compiled GO Gene Sets
HTML	R Script	Retrieve GO Gene Sets from BioMart
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	AnnotationData, Organism
Version	0.99.10
License	MIT + file LICENSE
Depends	R (>= 4.0.0)
Imports	utils, S4Vectors, GenomicRanges
LinkingTo
Suggests	biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT
SystemRequirements
Enhances
URL	https://github.com/jokergoo/BioMartGOGeneSets
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioMartGOGeneSets_0.99.10.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/BioMartGOGeneSets/
Package Downloads Report	Download Stats