AHPubMedDbs

DOI: 10.18129/B9.bioc.AHPubMedDbs  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see AHPubMedDbs.

SQLites, tibbles, and data.tables for AnnotationHub

Bioconductor version: 3.17

Supplies AnnotationHub with some preprocessed sqlite, tibble, and data.table datasets of PubMed. All the datasets are generated by our Snakemake workflow [pubmed-workflow](https://github.com/rikenbit/pubmed-workflow). For the details, see the README.md of pubmed-workflow.

Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AHPubMedDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHPubMedDbs")

 

HTML	R Script	Provide PubMed datasets for AnnotationHub
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, AnnotationHub
Version	1.6.0
License	Artistic-2.0
Depends	R (>= 4.1.0)
Imports	AnnotationHub(>= 2.22.0)
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/rikenbit/AHPubMedDbs/issues
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AHPubMedDbs_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/AHPubMedDbs/
Package Downloads Report	Download Stats