Contents

1 Motivation

This is an umbrella package for the alabaster framework that serves as an installation target to ensure that all (known) alabaster.* packages are installed. Doing so is necessary because various functions in alabaster.base dynamically identify the packages required to (un)serialize a particular resource. By installing all alabaster.* packages at once, we ensure that the dynamic look-up does not fail due to a missing package.

This umbrella is only provided for convenient installation and is not otherwise necessary for the functioning of alabaster framework. In fact, advanced users and package/application developers may prefer to install their required alabaster.* packages individually rather than relying on this umbrella. This reduces the number of dependent packages that need to be installed, which is possible in scenarios where a limited subset of resource types are to be processed.

Session information

sessionInfo()
## R version 4.3.0 RC (2023-04-13 r84269)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 22.04.2 LTS
## 
## Matrix products: default
## BLAS:   /home/biocbuild/bbs-3.17-bioc/R/lib/libRblas.so 
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_GB              LC_COLLATE=C              
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: America/New_York
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] BiocStyle_2.28.0
## 
## loaded via a namespace (and not attached):
##  [1] digest_0.6.31       R6_2.5.1            bookdown_0.33      
##  [4] fastmap_1.1.1       xfun_0.39           cachem_1.0.7       
##  [7] knitr_1.42          htmltools_0.5.5     rmarkdown_2.21     
## [10] cli_3.6.1           sass_0.4.5          jquerylib_0.1.4    
## [13] compiler_4.3.0      tools_4.3.0         evaluate_0.20      
## [16] bslib_0.4.2         yaml_2.3.7          BiocManager_1.30.20
## [19] jsonlite_1.8.4      rlang_1.1.0