tweeDEseq

DOI: 10.18129/B9.bioc.tweeDEseq  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see tweeDEseq.

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: 3.17

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Dolors Pelegri-Siso [aut, cre] , Juan R. Gonzalez [aut] , Mikel Esnaola [aut], Robert Castelo [aut]

Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tweeDEseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tweeDEseq")

 

PDF	R Script	tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions
PDF		Reference Manual

Details

biocViews	DNASeq, DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod
Version	1.46.2
In Bioconductor since	BioC 2.9 (R-2.14) (12 years)
License	GPL (>= 2)
Depends	R (>= 4.3.0)
Imports	Rcpp (>= 1.0.10), MASS, limma, edgeR, parallel, cqn, grDevices, graphics, stats, utils
LinkingTo	Rcpp
Suggests	tweeDEseqCountData, xtable
SystemRequirements
Enhances
URL	https://github.com/isglobal-brge/tweeDEseq/
BugReports	https://github.com/isglobal-brge/tweeDEseq/issues
Depends On Me
Imports Me	ptmixed
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tweeDEseq_1.46.2.tar.gz
Windows Binary	tweeDEseq_1.46.2.zip (64-bit only)
macOS Binary (x86_64)	tweeDEseq_1.46.2.tgz
macOS Binary (arm64)	tweeDEseq_1.46.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tweeDEseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tweeDEseq
Bioc Package Browser	https://code.bioconductor.org/browse/tweeDEseq/
Package Short Url	https://bioconductor.org/packages/tweeDEseq/
Package Downloads Report	Download Stats