DOI: 10.18129/B9.bioc.tidySummarizedExperiment  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see tidySummarizedExperiment.

Brings SummarizedExperiment to the Tidyverse

Bioconductor version: 3.17

tidySummarizedExperiment is an adapter that abstracts the 'SummarizedExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidySummarizedExperiment")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Overview of the tidySummarizedExperiment package
PDF   Reference Manual


biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 1.10.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends R (>= 4.1.0), SummarizedExperiment
Imports tibble (>= 3.0.4), dplyr, magrittr, tidyr, ggplot2, rlang, purrr, lifecycle, methods, plotly, utils, S4Vectors, tidyselect, ellipsis, vctrs, pillar, stringr, cli, fansi
Suggests BiocStyle, testthat, knitr, markdown
URL https://github.com/stemangiola/tidySummarizedExperiment
BugReports https://github.com/stemangiola/tidySummarizedExperiment/issues
Depends On Me
Imports Me
Suggests Me nullranges, tidybulk
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tidySummarizedExperiment_1.10.0.tar.gz
Windows Binary tidySummarizedExperiment_1.10.0.zip
macOS Binary (x86_64) tidySummarizedExperiment_1.10.0.tgz
macOS Binary (arm64) tidySummarizedExperiment_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tidySummarizedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidySummarizedExperiment
Bioc Package Browser https://code.bioconductor.org/browse/tidySummarizedExperiment/
Package Short Url https://bioconductor.org/packages/tidySummarizedExperiment/
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