DOI: 10.18129/  

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Predict Combined Function of Transcription Factors

Bioconductor version: 3.17

Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013) . Extend the algorithm to predict the combined function of two DNA-binding elements from comprable binding and expression data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at>

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biocViews Software, StatisticalMethod, Transcription
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License GPL-3
Depends R (>= 3.6)
Imports BiocGenerics, GenomicRanges, IRanges, matrixStats, methods, stats, graphics, shiny
Suggests testthat (>= 2.1.0), knitr, rmarkdown, shinytest, shinyBS, covr
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