tRNAdbImport

DOI: 10.18129/B9.bioc.tRNAdbImport  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see tRNAdbImport.

Importing from tRNAdb and mitotRNAdb as GRanges objects

Bioconductor version: 3.17

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAdbImport")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNAdbImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAdbImport")

 

HTML R Script tRNAdbImport
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5), GenomicRanges, Modstrings, Structstrings, tRNA
Imports Biostrings, BiocGenerics, stringr, xml2, S4Vectors, methods, httr, IRanges, utils
LinkingTo
Suggests knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer
SystemRequirements
Enhances
URL
BugReports https://github.com/FelixErnst/tRNAdbImport/issues
Depends On Me
Imports Me EpiTxDb
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNAdbImport_1.18.0.tar.gz
Windows Binary tRNAdbImport_1.18.0.zip
macOS Binary (x86_64) tRNAdbImport_1.18.0.tgz
macOS Binary (arm64) tRNAdbImport_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tRNAdbImport
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNAdbImport
Bioc Package Browser https://code.bioconductor.org/browse/tRNAdbImport/
Package Short Url https://bioconductor.org/packages/tRNAdbImport/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: