DOI: 10.18129/B9.bioc.singscore  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see singscore.

Rank-based single-sample gene set scoring method

Bioconductor version: 3.17

A simple single-sample gene signature scoring method that uses rank-based statistics to analyze the sample's gene expression profile. It scores the expression activities of gene sets at a single-sample level.

Author: Dharmesh D. Bhuva [aut] , Ruqian Lyu [aut, ctb], Momeneh Foroutan [aut, ctb] , Malvika Kharbanda [aut, cre]

Maintainer: Malvika Kharbanda <kharbanda.m at>

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biocViews GeneExpression, GeneSetEnrichment, Software
Version 1.20.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License GPL-3
Depends R (>= 3.6)
Imports methods, stats, graphics, ggplot2, grDevices, ggrepel, GSEABase, plotly, tidyr, plyr, magrittr, reshape, edgeR, RColorBrewer, Biobase, BiocParallel, SummarizedExperiment, matrixStats, reshape2, S4Vectors
Suggests pkgdown, BiocStyle, hexbin, knitr, rmarkdown, testthat, covr
Depends On Me
Imports Me SingscoreAMLMutations, TBSignatureProfiler
Suggests Me mastR, msigdb, vissE
Links To Me
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