DOI: 10.18129/B9.bioc.siggenes  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see siggenes.

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Bioconductor version: 3.17

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at>

Citation (from within R, enter citation("siggenes")):


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HTML identify.sam.html
HTML plot.ebam.html
HTML plot.finda0.html
HTML plot.sam.html
HTML print.ebam.html
HTML print.finda0.html
HTML print.sam.html
PDF R Script siggenes Manual
PDF siggenesRnews.pdf
HTML summary.ebam.html
HTML summary.sam.html
PDF   Reference Manual


biocViews DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software
Version 1.74.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18.5 years)
License LGPL (>= 2)
Depends Biobase, multtest, splines, methods
Imports stats4, grDevices, graphics, stats, scrime (>= 1.2.5)
Suggests affy, annotate, genefilter, KernSmooth
Depends On Me KCsmart
Imports Me DeSousa2013, minfi, trio, XDE
Suggests Me GCSscore, logicFS
Links To Me
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