DOI: 10.18129/B9.bioc.sesame  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see sesame.

SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Bioconductor version: 3.17

Tools For analyzing Illumina Infinium DNA methylation arrays. SeSAMe provides utilities to support analyses of multiple generations of Infinium DNA methylation BeadChips, including preprocessing, quality control, visualization and inference. SeSAMe features accurate detection calling, intelligent inference of ethnicity, sex and advanced quality control routines.

Author: Wanding Zhou [aut, cre] , Wubin Ding [ctb], David Goldberg [ctb], Ethan Moyer [ctb], Bret Barnes [ctb], Timothy Triche [ctb], Hui Shen [aut]

Maintainer: Wanding Zhou <zhouwanding at>

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HTML R Script 0. Basic Usage
HTML R Script 1. Quality Control
HTML R Script 2. Non-human Array
HTML R Script 3. Modeling
HTML R Script 4. Data Inference
HTML R Script 5. knowYourCG
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, MethylationArray, Preprocessing, QualityControl, Software
Version 1.18.4
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License MIT + file LICENSE
Depends R (>= 4.2.0), sesameData
Imports graphics, BiocParallel, utils, methods, stringr, readr, tibble, illuminaio, MASS, wheatmap (>= 0.2.0), GenomicRanges, IRanges, grid, preprocessCore, S4Vectors, ggplot2, BiocFileCache, GenomeInfoDb, stats, SummarizedExperiment, dplyr, reshape2
Suggests scales, knitr, DNAcopy, e1071, randomForest, RPMM, rmarkdown, testthat, tidyr, BiocStyle, ggrepel, grDevices, KernSmooth, pals
Depends On Me
Imports Me MethReg
Suggests Me RnBeads, sesameData, TCGAbiolinks
Links To Me
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