savR

DOI: 10.18129/B9.bioc.savR  

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see savR.

Parse and analyze Illumina SAV files

Bioconductor version: 3.17

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Citation (from within R, enter citation("savR")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("savR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("savR")

 

PDF R Script Using savR
PDF   Reference Manual

Details

biocViews Sequencing, Software
Version 1.37.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License AGPL-3
Depends ggplot2
Imports methods, reshape2, scales, gridExtra, XML
LinkingTo
Suggests Cairo, testthat
SystemRequirements
Enhances
URL https://github.com/bcalder/savR
BugReports https://github.com/bcalder/savR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package savR_1.37.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/savR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/savR
Bioc Package Browser https://code.bioconductor.org/browse/savR/
Package Short Url https://bioconductor.org/packages/savR/
Package Downloads Report Download Stats

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