DOI: 10.18129/B9.bioc.qrqc  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see qrqc.

Quick Read Quality Control

Bioconductor version: 3.17

Quickly scans reads and gathers statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.

Author: Vince Buffalo

Maintainer: Vince Buffalo <vsbuffalo at ucdavis.edu>

Citation (from within R, enter citation("qrqc")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews DataImport, Preprocessing, QualityControl, Sequencing, Software, Visualization
Version 1.54.0
In Bioconductor since BioC 2.8 (R-2.13) (12.5 years)
License GPL (>=2)
Depends reshape, ggplot2, Biostrings, biovizBase, brew, xtable, testthat
Imports reshape, ggplot2, Biostrings, biovizBase, graphics, methods, plyr, stats
LinkingTo Rhtslib(>= 1.15.3)
SystemRequirements GNU make
URL http://github.com/vsbuffalo/qrqc
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/qrqc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qrqc
Package Short Url https://bioconductor.org/packages/qrqc/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: