DOI: 10.18129/B9.bioc.oppti  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see oppti.

Outlier Protein and Phosphosite Target Identifier

Bioconductor version: 3.17

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Citation (from within R, enter citation("oppti")):


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biocViews BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License MIT
Depends R (>= 3.5)
Imports limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist
Suggests markdown
URL https://github.com/Huang-lab/oppti
BugReports https://github.com/Huang-lab/oppti/issues
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Follow Installation instructions to use this package in your R session.

Source Package oppti_1.14.0.tar.gz
Windows Binary oppti_1.14.0.zip (64-bit only)
macOS Binary (x86_64) oppti_1.14.0.tgz
macOS Binary (arm64) oppti_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/oppti
Bioc Package Browser https://code.bioconductor.org/browse/oppti/
Package Short Url https://bioconductor.org/packages/oppti/
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