DOI: 10.18129/B9.bioc.ngsReports  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ngsReports.

Load FastqQC reports and other NGS related files

Bioconductor version: 3.17

This package provides methods and object classes for parsing FastQC reports and output summaries from other NGS tools into R. As well as parsing files, multiple plotting methods have been implemented for visualising the parsed data. Plots can be generated as static ggplot objects or interactive plotly objects.

Author: Stevie Pederson [aut, cre] , Christopher Ward [aut], Thu-Hien To [aut]

Maintainer: Stevie Pederson < at>

Citation (from within R, enter citation("ngsReports")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script An Introduction To ngsReports
PDF   Reference Manual
Text   NEWS


biocViews QualityControl, ReportWriting, Software
Version 2.2.4
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License file LICENSE
Depends R (>= 4.2.0), BiocGenerics, ggplot2 (>= 3.4.0), patchwork (>= 1.1.1), tibble (>= 1.3.1)
Imports Biostrings, checkmate, dplyr (>= 1.1.0), DT, forcats, ggdendro, grDevices (>= 3.6.0), grid, jsonlite, lifecycle, lubridate, methods, pander, plotly (>= 4.9.4), readr, reshape2, rlang, rmarkdown, scales, stats, stringr, tidyr, tidyselect (>= 0.2.3), utils, zoo
Suggests BiocStyle, Cairo, knitr, testthat, truncnorm
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