netboost

DOI: 10.18129/B9.bioc.netboost  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see netboost.

Network Analysis Supported by Boosting

Bioconductor version: 3.17

Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.

Author: Pascal Schlosser [aut, cre], Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]

Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netboost")

 

HTML	R Script	The Netboost users guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics
Version	2.8.0
In Bioconductor since	BioC 3.9 (R-3.6) (4.5 years)
License	GPL-3
Depends	R (>= 4.0.0)
Imports	Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, BiocStyle, R.utils
LinkingTo	Rcpp, RcppParallel
Suggests	knitr, markdown, rmarkdown
SystemRequirements	GNU make, Bash, Perl, Gzip
Enhances
URL	https://bioconductor.org/packages/release/bioc/html/netboost.html
BugReports	pascal.schlosser@uniklinik-freiburg.de
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netboost_2.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)	netboost_2.8.0.tgz
macOS Binary (arm64)	netboost_2.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/netboost
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/netboost
Bioc Package Browser	https://code.bioconductor.org/browse/netboost/
Package Short Url	https://bioconductor.org/packages/netboost/
Package Downloads Report	Download Stats